Basic Information
Locus ID:
BniB07g047080.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ATP binding DNA binding helicase nucleic acid binding protein binding zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 50283895 | 50288930 | - | BniB07g047080.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 134,421.50 Da | 49.21 | 72.37 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 527 | 845 | 3.66489E-88 | - |
| CDD | cd18793 | SF2_C_SNF | 1024 | 1174 | 4.87388E-54 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 543 | 922 | 1.1E-70 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1063 | 1164 | 4.1E-16 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 951 | 988 | 1.7E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 947 | 993 | 2.91E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 854 | 1221 | 5.32E-57 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 517 | 845 | 5.93E-45 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 718 | 856 | 1.1E-30 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 940 | 1001 | 1.5E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 860 | 1223 | 1.9E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 506 | 694 | 1.8E-21 | IPR038718 |
| SMART | SM00490 | helicmild6 | 1081 | 1164 | 5.4E-17 | IPR001650 |
| SMART | SM00487 | ultradead3 | 523 | 812 | 3.8E-30 | IPR014001 |
| SMART | SM00184 | ring_2 | 951 | 989 | 4.7E-6 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 542 | 807 | 12.238119 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1057 | 1217 | 14.826069 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 951 | 990 | 10.305834 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 705 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 735 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 613 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 595 | 618 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_018440079.1 | PREDICTED: helicase-like transcription factor CHR28 [Raphanus sativus] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0JZA7 | helicase-like transcription factor CHR28 OS=Raphanus sativus OX=3726 GN=LOC108812337 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology