Basic Information
Locus ID:
BniB07g045040.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 49093917 | 49095923 | + | BniB07g045040.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 50,725.75 Da | 63.29 | 56.51 | -1.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 321 | 404 | 3.7E-20 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 421 | 452 | 1.9E-7 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 320 | 405 | 9.2E-28 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 163 | - | - |
| Coils | Coil | Coil | 358 | 378 | - | - |
| Coils | Coil | Coil | 319 | 346 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_013585746.1 | PREDICTED: uncharacterized protein LOC106294645 [Brassica oleracea var. oleracea] | 0 |
| TrEMBL | A0A8X7VSX0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_020163 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology