Basic Information
Locus ID:
BniB07g044610.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
prolyl 4-hydroxylase 10
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 48885042 | 48888639 | - | BniB07g044610.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.89 | 60,221.52 Da | 44.17 | 90.80 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 494 | 536 | 5.62166E-19 | - |
| Pfam | PF13639 | Ring finger domain | 493 | 536 | 1.0E-10 | IPR001841 |
| Pfam | PF13640 | 2OG-Fe(II) oxygenase superfamily | 163 | 281 | 3.2E-19 | IPR044862 |
| SUPERFAMILY | SSF57850 | RING/U-box | 487 | 539 | 4.04E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 463 | 539 | 2.4E-20 | IPR013083 |
| Gene3D | G3DSA:2.60.120.620 | q2cbj1_9rhob like domain | 76 | 282 | 1.9E-79 | - |
| SMART | SM00184 | ring_2 | 494 | 535 | 4.2E-6 | IPR001841 |
| SMART | SM00702 | p4hc | 83 | 281 | 1.9E-61 | IPR006620 |
| ProSiteProfiles | PS51471 | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 159 | 282 | 12.205518 | IPR005123 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 494 | 536 | 12.25323 | IPR001841 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66060.1 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein. | 0 |
| RefSeq | XP_018456590.1 | PREDICTED: probable prolyl 4-hydroxylase 10 [Raphanus sativus] | 0 |
| F4JZ24 | Probable prolyl 4-hydroxylase 10 OS=Arabidopsis thaliana OX=3702 GN=P4H10 PE=3 SV=1 | 0 | |
| TrEMBL | A0A816IR47 | (rape) hypothetical protein (Fragment) OS=Brassica napus OX=3708 GN=DARMORV10_C09P12050.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology