Basic Information
Locus ID:
BniB07g044560.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
glycosyl hydrolase family 38 protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 48868592 | 48873885 | + | BniB07g044560.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.37 | 116,142.17 Da | 42.61 | 78.16 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 43 | 319 | 1.20898E-174 | - |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 600 | 816 | 2.7E-53 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 44 | 356 | 6.2E-95 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 361 | 453 | 1.7E-20 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 899 | 1009 | 1.4E-11 | IPR041147 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 464 | 1012 | 9.89E-133 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 361 | 455 | 1.73E-27 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 32 | 357 | 6.9E-110 | IPR011330 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 404 | 459 | 1.4E-21 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 890 | 1016 | 8.7E-33 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 324 | 403 | 2.5E-30 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 43 | 323 | 2.6E-119 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 467 | 578 | 1.2E-24 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 597 | 864 | 2.9E-93 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 361 | 435 | 1.5E-23 | IPR015341 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 971 | 990 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_018456174.1 | PREDICTED: probable alpha-mannosidase At5g66150 [Raphanus sativus] | 0 |
| Q9FKW9 | Probable alpha-mannosidase At5g66150 OS=Arabidopsis thaliana OX=3702 GN=At5g66150 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6J0L997 | Alpha-mannosidase OS=Raphanus sativus OX=3726 GN=LOC108827297 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology