Basic Information
Locus ID:
BniB07g044230.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
DA1-related
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 48759458 | 48761874 | - | BniB07g044230.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 59,553.95 Da | 54.57 | 73.75 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 151 | 201 | 5.61208E-17 | - |
| Pfam | PF12315 | Protein DA1 | 297 | 507 | 7.8E-88 | IPR022087 |
| Pfam | PF00412 | LIM domain | 151 | 189 | 1.5E-6 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 146 | 176 | 9.81E-6 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 136 | 206 | 8.8E-9 | - |
| SMART | SM00132 | lim_4 | 150 | 212 | 0.0015 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 45 | 64 | 8.509762 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 149 | 219 | 10.2565 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 151 | 185 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 144 | - | - |
| Coils | Coil | Coil | 107 | 131 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66640.4 | - | 0 |
| RefSeq | XP_018456863.1 | PREDICTED: LOW QUALITY PROTEIN: protein DA1-related 3 [Raphanus sativus] | 0 |
| Q9LVR6 | Protein DA1-related 3 OS=Arabidopsis thaliana OX=3702 GN=DAR3 PE=4 SV=2 | 0 | |
| TrEMBL | A0A6J0LAJ5 | LOW QUALITY PROTEIN: protein DA1-related 3 OS=Raphanus sativus OX=3726 GN=LOC108827862 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology