Basic Information
Locus ID:
BniB07g043380.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 48373914 | 48377163 | + | BniB07g043380.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 109,160.55 Da | 33.22 | 96.22 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 23 | 65 | 7.2E-7 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 682 | 906 | 7.0E-42 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 142 | 198 | 1.4E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 478 | 537 | 1.9E-6 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 74 | 399 | 5.49E-56 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 673 | 981 | 7.82E-69 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 311 | 613 | 4.86E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 666 | 758 | 6.9E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 22 | 203 | 2.3E-39 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 310 | 625 | 7.3E-84 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 204 | 309 | 2.8E-30 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 759 | 987 | 2.6E-56 | - |
| SMART | SM00220 | serkin_6 | 680 | 987 | 1.6E-31 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 476 | 500 | 25.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 165 | 188 | 7.1 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 429 | 452 | 370.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 238 | 262 | 69.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 548 | 572 | 10.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 680 | 988 | 37.389389 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 686 | 709 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 807 | 819 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65710.1 | HAESA-like 2. | 0 |
| RefSeq | XP_009112195.1 | LRR receptor-like serine/threonine-protein kinase HSL2 [Brassica rapa] | 0 |
| C0LGX3 | LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana OX=3702 GN=HSL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B0Z4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_020024 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology