Basic Information
Locus ID:
BniB07g042140.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Tetratricopeptide repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 47785287 | 47788439 | + | BniB07g042140.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 72,425.52 Da | 51.60 | 87.47 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13181 | Tetratricopeptide repeat | 152 | 181 | 0.055 | IPR019734 |
| Pfam | PF13424 | Tetratricopeptide repeat | 565 | 628 | 7.2E-8 | - |
| Pfam | PF13432 | Tetratricopeptide repeat | 253 | 300 | 0.0064 | - |
| Pfam | PF07719 | Tetratricopeptide repeat | 366 | 399 | 2.1E-6 | IPR013105 |
| SUPERFAMILY | SSF48452 | TPR-like | 220 | 630 | 2.56E-34 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 132 | 330 | 3.3E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 342 | 430 | 1.4E-9 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 565 | 642 | 2.4E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 477 | 564 | 8.0E-12 | IPR011990 |
| SMART | SM00028 | tpr_5 | 277 | 310 | 0.6 | IPR019734 |
| SMART | SM00028 | tpr_5 | 599 | 632 | 0.0011 | IPR019734 |
| SMART | SM00028 | tpr_5 | 495 | 528 | 120.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 152 | 185 | 11.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 529 | 562 | 0.3 | IPR019734 |
| SMART | SM00028 | tpr_5 | 243 | 276 | 14.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 366 | 399 | 6.1E-6 | IPR019734 |
| SMART | SM00028 | tpr_5 | 565 | 598 | 5.9E-4 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 366 | 399 | 10.2664 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 529 | 562 | 8.7619 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 565 | 598 | 10.5319 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 599 | 632 | 8.9684 | IPR019734 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63200.1 | tetratricopeptide repeat (TPR)-containing protein. | 0 |
| RefSeq | XP_018456787.1 | PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY isoform X1 [Raphanus sativus] | 0 |
| TrEMBL | A0A6J0L9M0 | probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY isoform X1 OS=Raphanus sativus OX=3726 GN=LOC108827798 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25967 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6569 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028505 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26703, Sbi_jg33859 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15215, Seu_jg24899 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011771 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl74014, Sgl77518 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005654, gene:ENSEOMG00000037194 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0008570, CQ.Regalona.r1.9BG0008630 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30140530 |
| Apiaceae | Apium graveolens | 1 | Ag4G00241 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G001920 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712438 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_04.597.V1.1, AsparagusV1_05.2410.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G32583 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G63200.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003779m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g26330.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g042140.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1911 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g03480 |
| Hydrocharitaceae | Thalassia testudinum | 10 | gene.Thate01g14580, gene.Thate01g14590, gene.Thate02g15980 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1010 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019715 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G12563, Lb5G26931 |
| Poaceae | Echinochloa crus-galli | 2 | BH02.4262, CH02.4291 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0043590, gene-QOZ80_1BG0093610 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0304640.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057188 |
| Poaceae | Oryza coarctata | 2 | Oco01G027730, Oco02G028820 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g67920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G372700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0600333, Pt_Chr0600377 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr03G022210, Chr05G031220, Chr08G019790, Chr0G024410 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G619100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG055690, gene_TRIDC3BG062350 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G390800.2, TraesCS3B02G422600.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb144210_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28430 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11756 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1136, evm.TU.LG12.481 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g07230 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.404 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28970 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10920 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1917 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.261 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000468 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14646 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1395 |
| Salicaceae | Populus euphratica | 1 | populus_peu30198 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132601759 |
| Solanaceae | Solanum chilense | 1 | SOLCI002887700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021018 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16007 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0905 |
| Zosteraceae | Zostera marina | 1 | Zosma03g15530.v3.1 |