Basic Information
Locus ID:
BniB07g042070.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
histone deacetylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 47745836 | 47748586 | - | BniB07g042070.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 52,317.92 Da | 42.88 | 72.21 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 24 | 331 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 38 | 329 | 2.1E-86 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 19 | 383 | 2.73E-125 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 10 | 397 | 1.4E-137 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 3 | 460 | 2.6E-204 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 40 | 57 | 3.1E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 106 | 123 | 3.1E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 127 | 147 | 3.1E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 73 | 91 | 3.1E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 244 | 262 | 3.1E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 227 | 240 | 3.1E-60 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 181 | 196 | 2.5E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 266 | 276 | 2.5E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 168 | 184 | 3.1E-60 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 149 | 172 | 2.5E-24 | IPR000286 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 467 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_013612552.1 | PREDICTED: histone deacetylase 6 [Brassica oleracea var. oleracea] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VSH1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_019938 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology