Basic Information
Locus ID:
BniB07g041540.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
40s ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 47437092 | 47437705 | + | BniB07g041540.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.73 | 13,638.85 Da | 38.54 | 92.62 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 24 | 118 | 1.8E-27 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 22 | 119 | 5.49E-30 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 6 | 121 | 1.1E-47 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 24 | 118 | 1.2E-37 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 21 | 119 | 1.2E-39 | IPR005729 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 46 | 61 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 57 | 72 | 6.8E-14 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 22 | 35 | 6.8E-14 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 79 | 93 | 6.8E-14 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 20 | 119 | 18.112637 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47370.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_009151361.1 | 40S ribosomal protein S20-2 [Brassica rapa] | 0 |
| Q9STY6 | Small ribosomal subunit protein uS10y OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1 | 0 | |
| TrEMBL | A0A397XWP7 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA09T36418Z PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology