Basic Information
Locus ID:
BniB07g041170.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 47204556 | 47207632 | + | BniB07g041170.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 92,342.05 Da | 37.02 | 98.88 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 657 | 703 | 1.2E-13 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 484 | 514 | 0.07 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 729 | 775 | 2.7E-9 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 516 | 565 | 9.1E-15 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 411 | 460 | 5.2E-13 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 586 | 635 | 1.0E-18 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 379 | 408 | 0.0097 | IPR002885 |
| SUPERFAMILY | SSF52058 | L domain-like | 2 | 194 | 2.44E-39 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 510 | 581 | 1.6E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 652 | 720 | 2.6E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 289 | 428 | 4.9E-21 | IPR011990 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 210 | 1.7E-48 | IPR032675 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 721 | 821 | 8.7E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 436 | 509 | 1.6E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 582 | 651 | 8.1E-23 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 767 | 800 | 2.1E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 449 | 483 | 1.1E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 413 | 447 | 5.7E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 554 | 587 | 3.2E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 659 | 693 | 7.8E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 589 | 623 | 1.1E-10 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 378 | 411 | 8.8E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 624 | 657 | 1.0E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 733 | 764 | 1.0E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 520 | 547 | 0.0021 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 484 | 517 | 1.7E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 552 | 586 | 12.386327 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 657 | 691 | 12.156139 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 376 | 410 | 9.54735 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 517 | 551 | 10.150222 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 622 | 656 | 11.531345 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 341 | 375 | 8.747175 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 729 | 763 | 10.851745 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 482 | 516 | 10.106377 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 411 | 446 | 9.558311 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 447 | 481 | 11.290196 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 587 | 621 | 13.208424 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 764 | 798 | 9.141782 | IPR002885 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 132 | 154 | 7.403927 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 36 | 49 | 4.0E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 130 | 143 | 4.0E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G61400.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_018452351.1 | PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Raphanus sativus] | 0 |
| Q9FLJ4 | Pentatricopeptide repeat-containing protein At5g61400 OS=Arabidopsis thaliana OX=3702 GN=At5g61400 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7TGY8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_096650 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25739 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g114320 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg31086, Sbi_jg31087, Sbi_jg58186 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25800 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004663 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000006569, gene:ENSEOMG00000021586 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0021750 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30144380 |
| Apiaceae | Apium graveolens | 1 | Ag10G02920 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3138.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G25377 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G61400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005336m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB07g041170.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.639 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011897 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G01801, Lb2G14045, Lb2G14046 |
| Poaceae | Echinochloa crus-galli | 1 | CH02.2277 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0534900, gene-QOZ80_6BG0488090 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0484770.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005089 |
| Poaceae | Oryza coarctata | 2 | Oco17G004930, Oco18G004970 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g25050.1, LOC_Os10g15160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G072400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702222, Pt_Chr0702237 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G010270, Chr14G013680, Chr21G012810 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G374300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG036520, gene_TRIDC5BG038530 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G229600.1.cds1, TraesCS5B02G228400.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb312410_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30868 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30296 |
| Posidoniaceae | Posidonia oceanica | 8 | gene.Posoc01g24530, gene.Posoc02g11950, gene.Posoc02g15500 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-28766, nbisL1-mrna-28767, nbisL1-mrna-28772 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11264 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1755 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.139 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000224 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22610 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1570 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600546 |
| Solanaceae | Solanum chilense | 1 | SOLCI005511700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021578 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10187 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2365 |