Basic Information
Locus ID:
BniB07g040740.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 46940487 | 46945081 | + | BniB07g040740.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 86,528.15 Da | 47.95 | 78.66 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 261 | 2.44023E-65 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 129 | 9.3E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 9 | 44 | 0.034 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 627 | 783 | 8.7E-49 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 53 | 87 | 0.001 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 135 | 171 | 4.1E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 175 | 213 | 7.3E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 294 | 3.4E-70 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 133 | 1.8E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 134 | 297 | 8.2E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 216 | 254 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 5 | 45 | 0.0022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 171 | 3.4E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 48 | 87 | 2.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 90 | 129 | 1.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 213 | 5.8E-10 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 222 | 15.588017 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 55 | 96 | 14.852817 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 97 | 131 | 11.73468 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 97 | 138 | 14.886235 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 12 | 54 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 12 | 44 | 8.518333 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 181 | 216 | 12.393768 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 55 | 89 | 10.996502 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 139 | 180 | 18.261473 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 139 | 176 | 14.081032 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 200 | 214 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 158 | 172 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 200 | 214 | 4.7E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 158 | 172 | 4.7E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 116 | 130 | 4.7E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 787 | 20.076988 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 524 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 562 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 499 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23430.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_013736870.2 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 [Brassica napus] | 0 |
| Q8H0T9 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis thaliana OX=3702 GN=KTN80.4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8X7VRM8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_019865 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology