Basic Information
Locus ID:
BniB07g040530.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 46829655 | 46831432 | - | BniB07g040530.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 27,794.60 Da | 36.55 | 82.03 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00806 | Pumilio-family RNA binding repeat | 176 | 193 | 0.02 | IPR001313 |
| Pfam | PF00806 | Pumilio-family RNA binding repeat | 66 | 80 | 0.029 | IPR001313 |
| Pfam | PF00806 | Pumilio-family RNA binding repeat | 210 | 224 | 0.052 | IPR001313 |
| SUPERFAMILY | SSF48371 | ARM repeat | 173 | 224 | 6.33E-6 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 22 | 80 | 8.06E-11 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 5 | 106 | 1.1E-13 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 125 | 226 | 1.5E-12 | IPR011989 |
| SMART | SM00025 | pum_5 | 171 | 206 | 0.11 | IPR001313 |
| SMART | SM00025 | pum_5 | 60 | 98 | 4.5 | IPR001313 |
| ProSiteProfiles | PS50303 | Pumilio homology domain (PUM-HD) profile. | 3 | 246 | 8.846903 | IPR033133 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73090.1 | 0 | |
| RefSeq | XP_010416084.1 | PREDICTED: uncharacterized protein LOC104701994 [Camelina sativa] | 0 |
| Q8TB72 | Pumilio homolog 2 OS=Homo sapiens OX=9606 GN=PUM2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7VN64 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_017421 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25121 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_5488, gene_5538 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah028639, Ah032252 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g168750 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg1920, Sbi_jg1921, Sbi_jg34604 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2848 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011667 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl77043 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000038304, gene:ENSEOMG00000041738 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30131070 |
| Apiaceae | Apium graveolens | 1 | Ag5G00946 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G004450 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103699427 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3447.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G25440 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G73090.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018923m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g28050.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g070270.2N, BniB07g040530.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g05040 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0640s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g06010 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.660 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.201, evm.TU.LG24.438 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g24780 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1212 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3872 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17280 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18781 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.494 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005872 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12397 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5511 |
| Salicaceae | Populus euphratica | 2 | populus_peu19850, populus_peu19851 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645004 |
| Solanaceae | Solanum chilense | 1 | SOLCI006111600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023442 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.18471_chr10_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0627 |
| Zosteraceae | Zostera marina | 1 | Zosma01g04340.v3.1 |