Basic Information
Locus ID:
BniB07g040330.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Inactive leucine-rich repeat receptor-like serine threonine-protein kinase At5g24100
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 46746458 | 46748607 | - | BniB07g040330.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.26 | 69,220.93 Da | 46.21 | 96.89 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 67 | 2.7E-8 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 351 | 615 | 4.7E-32 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 73 | 132 | 3.4E-7 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 350 | 616 | 3.79E-52 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 31 | 215 | 7.56E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 234 | 1.0E-46 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 311 | 421 | 4.7E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 423 | 621 | 2.0E-41 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 347 | 618 | 28.569773 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 353 | 375 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 245 | - | - |
| Coils | Coil | Coil | 608 | 621 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24100.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_013609769.1 | PREDICTED: inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At5g24100 [Brassica oleracea var. oleracea] | 0 |
| Q9FL63 | Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At5g24100 OS=Arabidopsis thaliana OX=3702 GN=At5g24100 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3E1H7 | Protein kinase domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 GN=106316428 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G24100.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003837m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g23210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g040330.2N |