Basic Information
Locus ID:
BniB07g039790.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
EBF2
Description:
EIN3-binding F box protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 46443286 | 46445291 | + | BniB07g039790.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 65,549.92 Da | 45.80 | 100.74 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 187 | 210 | 0.2 | IPR001611 |
| Pfam | PF00646 | F-box domain | 55 | 93 | 4.0E-6 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 239 | 260 | 0.21 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 321 | 341 | 0.18 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 294 | 617 | 2.51E-27 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 140 | 288 | 1.33E-21 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 50 | 92 | 4.06E-9 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 265 | 416 | 6.2E-19 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 49 | 264 | 1.9E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 417 | 619 | 3.0E-28 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 561 | 586 | 39.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 161 | 186 | 0.055 | IPR006553 |
| SMART | SM00256 | fbox_2 | 58 | 99 | 3.0E-5 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 345 | 370 | 0.018 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 454 | 479 | 0.018 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 239 | 264 | 0.072 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 319 | 344 | 0.0019 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 508 | 533 | 0.011 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 428 | 453 | 24.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 481 | 506 | 13.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 213 | 238 | 0.037 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 534 | 558 | 250.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 187 | 212 | 1.5E-5 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25350.1 | EIN3-binding F box protein 2. Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. | 0 |
| RefSeq | XP_009111664.1 | EIN3-binding F-box protein 2 [Brassica rapa] | 0 |
| Q708Y0 | EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VST4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_019792 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology