Basic Information
Locus ID:
BniB07g039680.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Pentacotripeptide-repeat region of PRORP
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 46363697 | 46366356 | - | BniB07g039680.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 64,706.11 Da | 41.94 | 77.78 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 339 | 386 | 1.8E-12 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 128 | 175 | 3.0E-11 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 201 | 246 | 4.6E-13 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 406 | 450 | 1.5E-12 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 272 | 300 | 0.0015 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 404 | 536 | 4.2E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 46 | 160 | 3.5E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 323 | 403 | 1.4E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 264 | 322 | 4.2E-11 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 182 | 263 | 9.8E-20 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 205 | 237 | 8.6E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 377 | 404 | 0.0011 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 341 | 375 | 3.8E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 409 | 443 | 3.3E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 133 | 164 | 2.0E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 167 | 195 | 7.0E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 272 | 304 | 7.4E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 374 | 404 | 9.174665 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 129 | 163 | 11.169622 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 164 | 198 | 9.689847 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 202 | 236 | 12.254791 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 269 | 303 | 10.161182 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 442 | 476 | 9.854266 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 339 | 373 | 13.065928 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 407 | 441 | 12.474017 | IPR002885 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25630.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_009111672.1 | pentatricopeptide repeat-containing protein At5g25630 [Brassica rapa] | 0 |
| Q8GZ63 | Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX=3702 GN=At5g25630 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7VT90 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_019770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg3824, jg7860 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10714, gene_8166 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014544, Ah034904 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_2g031840, BVRB_8g196490, BVRB_8g196500, BVRB_8g196530 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21000, Sbi_jg22782, Sbi_jg24975, Sbi_jg8835 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16657, Seu_jg19774 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007807 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl42210, Sgl46980, Sgl54062, Sgl62458, Sgl67003 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000010687, gene:ENSEOMG00000018396 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2AG0016360, CQ.Regalona.r1.2BG0018130 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30253400, pistato.v30256590 |
| Apiaceae | Apium graveolens | 2 | Ag10G01538, Ag7G00293 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G012070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710907 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1546.V1.1, AsparagusV1_07.2392.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G24253 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G21222.1, AT5G25630.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003915m.g.v1.0, Thhalv10012659m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g21900.v2.2, Sp6g23340.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g041700.2N, BniB07g025020.2N, BniB07g039680.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G2119, Ceq06G1498 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl04G2313, Cgl04G2324, Cgl06G1553 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g12490, gene.Cymno02g13330, gene.Cymno12g02340 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g15860 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG07.1088, evm.TU.LG07.775 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003850 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb7G34995, Lb7G35002 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2290, BH07.3959, CH06.2313 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0521710, gene-QOZ80_6BG0474830 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0248630.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_051474, gene-QYE76_051482 |
| Poaceae | Oryza coarctata | 2 | Oco01G005680, Oco02G005770 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G191200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204886, Pt_Chr0205057 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr07G014820, Chr21G007420, Chr31G007880 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G276300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG020600, gene_TRIDC3BG030970 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G153300.1, TraesCS3B02G179900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb315460_P002 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29714 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2875, evm.TU.LG05.2345, evm.TU.LG07.1110 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g13310, gene.Posoc09g07670 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60417.2, evm.TU.60418.2 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25631 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14993 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4712 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1113 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001456 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14184, nbisL1-mrna-9731 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21067, nbisL1-mrna-996 |
| Salicaceae | Populus euphratica | 4 | populus_peu04868, populus_peu12782, populus_peu21928 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603462, gene-LOC132635663 |
| Solanaceae | Solanum chilense | 2 | SOLCI000411300, SOLCI005497300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107026118, gene-LOC107028521 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.32841_chr09_-, STRG.3917_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G0334, TC12G1292 |
| Zosteraceae | Zostera marina | 1 | Zosma05g13580.v3.1 |