Basic Information
Locus ID:
BniB07g038700.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 45862923 | 45863774 | + | BniB07g038700.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.78 | 21,560.42 Da | 34.34 | 97.47 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17135 | Ribosomal protein 60S L18 and 50S L18e | 9 | 194 | 4.7E-92 | IPR021131 |
| SUPERFAMILY | SSF52080 | Ribosomal proteins L15p and L18e | 27 | 146 | 1.83E-25 | IPR036227 |
| Gene3D | G3DSA:3.100.10.10 | - | 8 | 194 | 1.6E-94 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 194 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05590.1 | ribosomal protein L18. Encodes cytoplasmic ribosomal protein L18. | 0 |
| RefSeq | XP_018477981.1 | PREDICTED: 60S ribosomal protein L18-2-like [Raphanus sativus] | 0 |
| P42791 | Large ribosomal subunit protein eL18y OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7SE95 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_034205 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology