Basic Information
Locus ID:
BniB07g038200.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the cysteine synthase cystathionine beta- synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 45609874 | 45621654 | + | BniB07g038200.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 122,799.35 Da | 38.14 | 89.14 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01561 | CBS_like | 831 | 1121 | 3.63009E-132 | - |
| CDD | cd01561 | CBS_like | 462 | 748 | 2.58836E-123 | - |
| Pfam | PF04504 | Protein of unknown function, DUF573 | 169 | 265 | 2.3E-32 | IPR007592 |
| Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | 458 | 737 | 1.8E-62 | IPR001926 |
| Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | 827 | 1111 | 1.4E-63 | IPR001926 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 452 | 741 | 3.14E-92 | IPR036052 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 822 | 1128 | 9.56E-99 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 864 | 966 | 1.7E-128 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 495 | 597 | 5.6E-122 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 459 | 741 | 5.6E-122 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 828 | 1121 | 1.7E-128 | IPR036052 |
| TIGRFAM | TIGR01136 | cysKM: cysteine synthase | 827 | 1125 | 1.4E-124 | IPR005856 |
| TIGRFAM | TIGR01139 | cysK: cysteine synthase A | 827 | 1125 | 2.0E-129 | IPR005859 |
| TIGRFAM | TIGR01139 | cysK: cysteine synthase A | 458 | 742 | 4.2E-120 | IPR005859 |
| TIGRFAM | TIGR01136 | cysKM: cysteine synthase | 458 | 742 | 5.4E-115 | IPR005856 |
| ProSitePatterns | PS00901 | Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. | 852 | 870 | - | IPR001216 |
| ProSitePatterns | PS00901 | Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. | 483 | 501 | - | IPR001216 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 98 | - | - |
| Coils | Coil | Coil | 212 | 239 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00270 (Cysteine and methionine metabolism)
map00270 (Cysteine and methionine metabolism)
ko00920 (Sulfur metabolism)
map00920 (Sulfur metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G28020.1 | cysteine synthase D2. Encodes cysteine synthase CysD2. | 0 |
| RefSeq | XP_050223203.1 | uncharacterized protein LOC126673216 isoform X1 [Mercurialis annua] | 0 |
| Q9SXS7 | Bifunctional L-3-cyanoalanine synthase/cysteine synthase D2 OS=Arabidopsis thaliana OX=3702 GN=CYSD2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S9IZ54 | Cysteine synthase OS=Brassica cretica OX=69181 GN=F2Q70_00000328 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology