Basic Information
Locus ID:
BniB07g035850.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 44060552 | 44062091 | - | BniB07g035850.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 47,607.47 Da | 51.12 | 79.74 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 255 | 278 | 0.0056 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 233 | 251 | 0.68 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 202 | 279 | 1.14E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 166 | 216 | 2.4E-5 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 170 | 325 | 5.0E-13 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 256 | 281 | 25.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 230 | 255 | 0.13 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27290.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_018456078.1 | PREDICTED: F-box protein At3g27290 [Raphanus sativus] | 0 |
| Q9LK24 | F-box protein At3g27290 OS=Arabidopsis thaliana OX=3702 GN=At3g27290 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VS23 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_019432 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology