Basic Information
Locus ID:
BniB07g035150.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 43737658 | 43743518 | - | BniB07g035150.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.57 | 104,516.09 Da | 47.76 | 90.73 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 355 | 385 | 7.96866E-5 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 762 | 891 | 2.99427E-61 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 774 | 882 | 1.0E-32 | IPR001650 |
| Pfam | PF03151 | Triose-phosphate Transporter family | 192 | 298 | 2.6E-34 | IPR004853 |
| Pfam | PF03151 | Triose-phosphate Transporter family | 75 | 190 | 2.5E-42 | IPR004853 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 567 | 736 | 5.2E-48 | IPR011545 |
| Pfam | PF00397 | WW domain | 354 | 384 | 7.0E-7 | IPR001202 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 615 | 897 | 3.54E-73 | IPR027417 |
| SUPERFAMILY | SSF103481 | Multidrug resistance efflux transporter EmrE | 116 | 204 | 1.44E-5 | - |
| SUPERFAMILY | SSF51045 | WW domain | 349 | 387 | 5.82E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 477 | 752 | 3.2E-82 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 349 | 399 | 4.6E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 753 | 920 | 2.1E-56 | IPR027417 |
| SMART | SM00487 | ultradead3 | 562 | 765 | 5.3E-63 | IPR014001 |
| SMART | SM00490 | helicmild6 | 802 | 882 | 2.3E-33 | IPR001650 |
| SMART | SM00456 | ww_5 | 353 | 386 | 4.2E-6 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 352 | 386 | 11.4081 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 574 | 748 | 29.949724 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 777 | 921 | 24.754993 | IPR001650 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 358 | 384 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 694 | 702 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 412 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_018492358.1 | PREDICTED: DEAD-box ATP-dependent RNA helicase 14 isoform X1 [Raphanus sativus] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0D3B994 | TPT domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology