Basic Information
Locus ID:
BniB07g034090.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 43288993 | 43290000 | + | BniB07g034090.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 35,774.08 Da | 54.35 | 75.37 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 145 | 188 | 5.61524E-19 | - |
| Pfam | PF13639 | Ring finger domain | 145 | 188 | 1.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 127 | 192 | 3.06E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 121 | 197 | 3.1E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 146 | 187 | 3.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 146 | 188 | 12.917115 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 264 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03550.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018490767.1 | PREDICTED: RING-H2 finger protein ATL51 [Raphanus sativus] | 0 |
| Q9SRQ8 | RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7VSC5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_019365 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology