Basic Information
Locus ID:
BniB07g033940.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 43188880 | 43191436 | + | BniB07g033940.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 88,678.03 Da | 41.04 | 104.23 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 649 | 704 | 4.0E-10 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 103 | 162 | 1.4E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 200 | 259 | 7.4E-7 | IPR001611 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 529 | 567 | 9.1E-7 | IPR025875 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 70 | 1.5E-8 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 321 | 342 | 1.7 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 374 | 710 | 2.43E-51 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 69 | 366 | 8.63E-55 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 285 | 379 | 1.6E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 380 | 458 | 3.4E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 459 | 746 | 9.5E-75 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 185 | 1.1E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 186 | 284 | 5.8E-30 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 222 | 246 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 270 | 295 | 240.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 643 | 666 | 0.8 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 150 | 179 | 310.0 | - |
| SMART | SM00369 | LRR_typ_2 | 667 | 691 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 198 | 221 | 280.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 552 | 576 | 5.6 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 667 | 693 | 14.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 246 | 275 | 150.0 | - |
| SMART | SM00369 | LRR_typ_2 | 506 | 530 | 58.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 552 | 578 | 20.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 222 | 242 | 210.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 198 | 219 | 610.0 | - |
| SMART | SM00369 | LRR_typ_2 | 126 | 150 | 12.0 | IPR003591 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 22 | 5.0 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 440 | 453 | 1.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 552 | 565 | 1.2E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04220.1 | receptor like protein 46. | 0 |
| RefSeq | XP_048606045.1 | receptor-like protein 46 [Brassica napus] | 0 |
| F4JGB6 | Receptor-like protein 46 OS=Arabidopsis thaliana OX=3702 GN=RLP46 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8S9M4U8 | LRRNT_2 domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q70_00009563 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |