Basic Information
Locus ID:
BniB07g031750.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 41961408 | 41962505 | + | BniB07g031750.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.24 | 42,089.56 Da | 50.39 | 86.44 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 1 | 46 | 1.9E-10 | IPR001810 |
| Pfam | PF07734 | F-box associated | 198 | 361 | 4.9E-39 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 139 | 1.96E-19 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 112 | 351 | 7.19E-6 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 66 | 1.1E-7 | - |
| SMART | SM00256 | fbox_2 | 6 | 46 | 1.5E-9 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 107 | 328 | 2.4E-48 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 46 | 10.954661 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21120.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_013624265.1 | PREDICTED: putative F-box protein At3g21120 [Brassica oleracea var. oleracea] | 0 |
| Q9LJC0 | Putative F-box protein At3g21120 OS=Arabidopsis thaliana OX=3702 GN=At3g21120 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X7VR86 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_019146 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005860 |
| Brassicaceae | Arabidopsis thaliana | 81 | AT1G11620.1, AT1G25141.1, AT1G50470.1, AT1G62270.1 ... |
| Brassicaceae | Eutrema salsugineum | 96 | Thhalv10000454m.g.v1.0, Thhalv10000467m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 15 | Sp1g20770.v2.2, Sp3g14050.v2.2, Sp3g15200.v2.2 ... |
| Brassicaceae | Brassica nigra | 83 | BniB01g038780.2N, BniB01g039020.2N, BniB01g039120.2N ... |