Basic Information
Locus ID:
BniB07g031550.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ABC transporter E family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 41889896 | 41892772 | - | BniB07g031550.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 71,088.16 Da | 42.03 | 93.64 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 41 | 7.7E-9 | IPR001810 |
| Pfam | PF07734 | F-box associated | 197 | 351 | 2.7E-42 | IPR006527 |
| Pfam | PF07734 | F-box associated | 431 | 598 | 5.0E-44 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 115 | 1.15E-13 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 100 | 320 | 9.15E-5 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 47 | 3.0E-6 | - |
| SMART | SM00256 | fbox_2 | 8 | 48 | 2.3E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 358 | 553 | 3.2E-31 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 100 | 320 | 3.5E-42 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 2 | 47 | 9.788908 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32140.1 | F-box family protein. | 0 |
| RefSeq | XP_013624262.1 | PREDICTED: F-box protein At1g59680-like [Brassica oleracea var. oleracea] | 0 |
| Q9FVQ9 | Putative F-box protein At1g32140 OS=Arabidopsis thaliana OX=3702 GN=At1g32140 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X7VQ73 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_019130 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 24 | AT1G24800.1, AT1G24881.1, AT1G25055.1, AT1G25150.1 ... |
| Brassicaceae | Eutrema salsugineum | 15 | Thhalv10000447m.g.v1.0, Thhalv10002786m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g11150.v2.2, Sp3g32750.v2.2 |
| Brassicaceae | Brassica nigra | 13 | BniB01g039260.2N, BniB02g015480.2N, BniB04g007550.2N ... |