Basic Information
Locus ID:
BniB07g031130.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 41647832 | 41648824 | + | BniB07g031130.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 35,915.72 Da | 48.41 | 92.55 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 62 | 328 | 1.52211E-88 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 62 | 301 | 4.4E-53 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 35 | 313 | 1.01E-83 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 25 | 330 | 2.4E-98 | IPR008949 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 248 | 260 | - | IPR033749 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 111 | 127 | - | IPR033749 |
| SFLD | SFLDG01017 | Polyprenyl Transferase Like | 37 | 328 | 0.0 | - |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 37 | 328 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20160.1 | Terpenoid synthases superfamily protein. | 0 |
| RefSeq | XP_009136050.2 | geranylgeranyl pyrophosphate synthase 10, mitochondrial [Brassica rapa] | 0 |
| Q9LJY2 | Geranylgeranyl pyrophosphate synthase 10, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g20160 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8AZB5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_019090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology