Basic Information
Locus ID:
BniB07g030930.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 41491842 | 41496087 | + | BniB07g030930.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 113,319.71 Da | 55.09 | 75.28 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 292 | 644 | 4.27102E-83 | - |
| CDD | cd18793 | SF2_C_SNF | 901 | 1005 | 4.06422E-52 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 760 | 796 | 2.1E-7 | IPR018957 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 313 | 722 | 2.2E-69 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 901 | 996 | 2.1E-13 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 278 | 644 | 2.75E-46 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 652 | 1022 | 2.86E-50 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 757 | 807 | 9.36E-12 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 659 | 1024 | 1.5E-57 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 747 | 811 | 1.6E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 410 | 497 | 1.2E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 503 | 658 | 6.1E-31 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 261 | 353 | 1.7E-11 | IPR038718 |
| SMART | SM00487 | ultradead3 | 288 | 621 | 2.8E-29 | IPR014001 |
| SMART | SM00490 | helicmild6 | 913 | 996 | 4.8E-18 | IPR001650 |
| SMART | SM00184 | ring_2 | 760 | 798 | 5.4E-5 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 307 | 606 | 11.590515 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 886 | 1032 | 12.600277 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 760 | 799 | 11.441815 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 775 | 784 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 858 | 880 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 71 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20010.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_018461645.1 | PREDICTED: helicase-like transcription factor CHR27 [Raphanus sativus] | 0 |
| Q9LHE4 | Helicase-like transcription factor CHR27 OS=Arabidopsis thaliana OX=3702 GN=CHR27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7UW32 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_041059 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology