halophFGD

Basic Information

Locus ID: BniB07g030840.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: Arginine and glutamate-rich 1

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B7	41418878	41419918	+	BniB07g030840.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.74	32,449.17 Da	40.11	82.87	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07734	F-box associated	143	269	3.8E-29	IPR006527
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	46	140	2.5E-19	IPR017451

KEGG Pathway

KO Term:

K13173 (arginine and glutamate-rich protein 1)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G20030.1	F-box and associated interaction domains-containing protein.	0
RefSeq	XP_018443694.1	PREDICTED: putative F-box protein At3g20030 [Raphanus sativus]	0
Swiss-Prot	Q9LJZ8	Putative F-box protein At3g20030 OS=Arabidopsis thaliana OX=3702 GN=At3g20030 PE=4 SV=1	0
TrEMBL	A0A8X8B018	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_019064 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	24	AT1G24800.1, AT1G24881.1, AT1G25055.1, AT1G25150.1 ... AT1G25211.1, AT1G32140.1, AT1G54550.1, AT1G59680.1, AT1G66490.1, AT1G67450.1, AT1G67455.1, AT2G33655.1, AT3G13680.1, AT3G13820.1, AT3G14030.1, AT3G19880.1, AT3G19890.1, AT3G20030.1, AT3G20400.1, AT3G49510.1, AT3G49520.1, AT4G05080.1, AT4G17200.1, AT5G60560.1
Brassicaceae	Eutrema salsugineum	15	Thhalv10000447m.g.v1.0, Thhalv10002786m.g.v1.0 ... Thhalv10003097m.g.v1.0, Thhalv10009753m.g.v1.0, Thhalv10009944m.g.v1.0, Thhalv10015452m.g.v1.0, Thhalv10019643m.g.v1.0, Thhalv10022026m.g.v1.0, Thhalv10022402m.g.v1.0, Thhalv10023084m.g.v1.0, Thhalv10023095m.g.v1.0, Thhalv10023820m.g.v1.0, Thhalv10023848m.g.v1.0, Thhalv10024142m.g.v1.0, Thhalv10027178m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g11150.v2.2, Sp3g32750.v2.2
Brassicaceae	Brassica nigra	13	BniB01g039260.2N, BniB02g015480.2N, BniB04g007550.2N ... BniB04g047270.2N, BniB05g002470.2N, BniB05g017590.2N, BniB06g018860.2N, BniB06g051530.2N, BniB07g030840.2N, BniB07g031550.2N, BniB07g055480.2N, BniB08g028340.2N, BniB08g067670.2N