Basic Information
Locus ID:
BniB07g029660.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box associated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 40661231 | 40668259 | - | BniB07g029660.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 84,218.38 Da | 40.07 | 93.76 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 199 | 342 | 7.3E-35 | IPR006527 |
| Pfam | PF00646 | F-box domain | 5 | 45 | 3.9E-7 | IPR001810 |
| Pfam | PF07734 | F-box associated | 551 | 710 | 4.5E-37 | IPR006527 |
| Pfam | PF00646 | F-box domain | 356 | 394 | 4.8E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 355 | 463 | 1.83E-11 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 57 | 1.26E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 42 | 2.6E-5 | - |
| SMART | SM00256 | fbox_2 | 357 | 397 | 9.9E-6 | IPR001810 |
| SMART | SM00256 | fbox_2 | 6 | 46 | 7.3E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 451 | 687 | 2.8E-47 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 100 | 336 | 1.2E-41 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 46 | 11.140122 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 351 | 401 | 9.073559 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17710.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_033144428.1 | F-box protein At3g17710-like [Brassica rapa] | 0 |
| Q9LUM6 | F-box protein At3g17710 OS=Arabidopsis thaliana OX=3702 GN=At3g17710 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VRJ5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_018960 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 22 | AT1G12170.1, AT1G12190.1, AT1G32430.1, AT1G47390.1 ... |
| Brassicaceae | Eutrema salsugineum | 17 | Thhalv10002898m.g.v1.0, Thhalv10006465m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g27690.v2.2, Sp5g16370.v2.2 |
| Brassicaceae | Brassica nigra | 23 | BniB01g008560.2N, BniB01g010040.2N, BniB01g047060.2N ... |