Basic Information
Locus ID:
BniB07g029560.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 40555790 | 40556722 | + | BniB07g029560.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 33,428.66 Da | 35.05 | 95.64 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 116 | 175 | 2.3E-9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 64 | 7.6E-5 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 24 | 251 | 2.38E-38 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 23 | 181 | 2.5E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 182 | 310 | 7.2E-22 | IPR032675 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 228 | 241 | 9.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 141 | 154 | 9.2E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17640.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | XP_009135539.1 | receptor protein-tyrosine kinase CEPR2 [Brassica rapa] | 0 |
| TrEMBL | A0A398A3N9 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA03T13181Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology