Basic Information
Locus ID:
BniB07g029480.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 40496612 | 40498635 | - | BniB07g029480.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 72,104.85 Da | 45.88 | 72.21 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13976 | GAG-pre-integrase domain | 439 | 504 | 7.5E-12 | IPR025724 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 515 | 642 | 7.46E-30 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 511 | 642 | 1.3E-26 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 515 | 643 | 15.998465 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 228 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48050.1 | 0 | |
| RefSeq | XP_010496488.1 | PREDICTED: uncharacterized protein LOC104773550 [Camelina sativa] | 0 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 | 0 | |
| TrEMBL | B2BXJ4 | LTRGag-pol-polymerase 3 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=LTR3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 11 | Sbi_jg22532, Sbi_jg22994, Sbi_jg35991, Sbi_jg47084 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg13583, Seu_jg220, Seu_jg24372 |
| Amaranthaceae | Suaeda glauca | 22 | Sgl20258, Sgl21425, Sgl22765, Sgl23137, Sgl26539, Sgl26751 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000004351, gene:ENSEOMG00000049261 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30096180 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G03871 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g03155.v2.2 |
| Brassicaceae | Brassica nigra | 13 | BniB01g008680.2N, BniB01g011550.2N, BniB01g033040.2N ... |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g08420, gene.Cymno02g12120, gene.Cymno07g04820 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g15590, gene.Thate06g10480 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7277 |
| Plantaginaceae | Plantago ovata | 7 | Pov_00001112, Pov_00012497, Pov_00029344, Pov_00029907 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00201, Lb1G06209 |
| Poaceae | Echinochloa crus-galli | 3 | CH01.4204, CH02.4285, CH02.754 |
| Poaceae | Lolium multiflorum | 23 | gene-QYE76_000053, gene-QYE76_005675, gene-QYE76_009235 ... |
| Poaceae | Oryza coarctata | 7 | Oco02G011690, Oco02G031780, Oco03G007110, Oco03G009910 ... |
| Poaceae | Sporobolus alterniflorus | 24 | Chr01G024190, Chr01G024200, Chr05G013180, Chr05G013190 ... |
| Poaceae | Zoysia japonica | 7 | nbis-gene-15370, nbis-gene-31910, nbis-gene-43348 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g29300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114075978 |
| Tamaricaceae | Reaumuria soongarica | 3 | MSTRG.20127_chr11_-, STRG.30077_chr10_+, gene_8045 |