Basic Information
Locus ID:
BniB07g029040.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 40272235 | 40273044 | + | BniB07g029040.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 30,338.28 Da | 91.80 | 73.23 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 114 | 157 | 8.24454E-20 | - |
| Pfam | PF13639 | Ring finger domain | 114 | 157 | 9.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 95 | 165 | 3.53E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 80 | 162 | 1.7E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 115 | 156 | 1.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 115 | 157 | 12.84335 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 218 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16720.1 | TOXICOS EN LEVADURA 2. RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. | 0 |
| RefSeq | XP_018485981.1 | PREDICTED: RING-H2 finger protein ATL2-like [Raphanus sativus] | 0 |
| Q8L9T5 | RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7VR00 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_018907 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology