Basic Information
Locus ID:
BniB07g028790.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box protein At3g16210
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 40147496 | 40148574 | - | BniB07g028790.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 28,944.82 Da | 32.51 | 85.08 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 38 | 5.3E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 51 | 5.63E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 40 | 4.4E-10 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 5.7E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 69 | 194 | 2.4E-11 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 48 | 11.219605 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16210.1 | F-box family protein. | 0 |
| RefSeq | XP_018489530.1 | PREDICTED: putative F-box protein At3g16210 [Raphanus sativus] | 0 |
| Q9LU24 | Putative F-box protein At3g16210 OS=Arabidopsis thaliana OX=3702 GN=At3g16210 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X7VQI9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_018888 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022033m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB07g028790.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007105 |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_037912, gene-QYE76_038073, gene-QYE76_038076 ... |