Basic Information
Locus ID:
BniB07g028530.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 39887352 | 39893905 | - | BniB07g028530.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 122,884.21 Da | 39.60 | 80.70 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 492 | 0.0011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 922 | 955 | 0.0029 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 496 | 535 | 0.061 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 415 | 995 | 4.79E-51 | IPR011047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 980 | 1104 | 9.42E-5 | IPR011044 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 349 | 448 | 6.41E-9 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 521 | 688 | 1.1E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 808 | 1098 | 9.1E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 319 | 519 | 3.6E-29 | IPR015943 |
| SMART | SM00668 | ctlh | 34 | 92 | 4.3E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1008 | 1048 | 190.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.4E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 495 | 536 | 0.0013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 492 | 2.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 4.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 539 | 582 | 44.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 873 | 913 | 0.19 | IPR001680 |
| SMART | SM00320 | WD40_4 | 405 | 445 | 0.42 | IPR001680 |
| SMART | SM00320 | WD40_4 | 916 | 955 | 5.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 828 | 870 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 585 | 625 | 10.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 923 | 957 | 10.284687 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.956597 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.111841 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 458 | 501 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 923 | 964 | 12.780889 | IPR001680 |
| Coils | Coil | Coil | 909 | 929 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_013736322.1 | topless-related protein 4 [Brassica napus] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8D9GL09 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAPAZ1V2_A03P39740.2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology