Basic Information
Locus ID:
BniB07g028220.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
UBC25
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 39669601 | 39672009 | + | BniB07g028220.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 61,480.10 Da | 45.89 | 71.10 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 289 | 415 | 1.59032E-34 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 290 | 435 | 3.7E-23 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 272 | 454 | 1.57E-41 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 251 | 521 | 6.0E-83 | IPR016135 |
| SMART | SM00212 | ubc_7 | 289 | 446 | 6.9E-21 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 286 | 446 | 36.92448 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| Coils | Coil | Coil | 96 | 120 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15355.1 | ubiquitin-conjugating enzyme 25. | 0 |
| RefSeq | XP_048632418.1 | putative ubiquitin-conjugating enzyme E2 38 [Brassica napus] | 0 |
| Q9LUQ5 | Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana OX=3702 GN=UBC25 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0NX35 | probable ubiquitin-conjugating enzyme E2 25 OS=Raphanus sativus OX=3726 GN=LOC108858914 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology