Basic Information
Locus ID:
BniB07g027620.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
1-phosphatidylinositol-3-phosphate 5-kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 39265781 | 39272176 | + | BniB07g027620.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 198,436.81 Da | 50.50 | 76.98 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03334 | Fab1_TCP | 386 | 658 | 7.85283E-140 | - |
| CDD | cd17300 | PIPKc_PIKfyve | 1482 | 1745 | 4.90911E-150 | IPR044769 |
| Pfam | PF01363 | FYVE zinc finger | 37 | 105 | 5.8E-16 | IPR000306 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1521 | 1687 | 6.5E-32 | IPR002498 |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 407 | 647 | 5.7E-34 | IPR002423 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 35 | 107 | 9.11E-19 | IPR011011 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 452 | 624 | 4.45E-42 | IPR027409 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1481 | 1745 | 7.19E-76 | - |
| Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1445 | 1602 | 1.8E-35 | IPR027484 |
| Gene3D | G3DSA:3.30.810.10 | - | 1605 | 1746 | 4.9E-40 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 28 | 115 | 2.1E-20 | IPR013083 |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 451 | 624 | 3.8E-54 | IPR027409 |
| SMART | SM00330 | PIPK_2 | 1455 | 1746 | 2.9E-119 | IPR002498 |
| SMART | SM00064 | fyve_4 | 32 | 107 | 1.2E-19 | IPR000306 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 40 | 106 | 12.942578 | IPR017455 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1419 | 1745 | 55.868076 | IPR002498 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1212 | 1244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 805 | 858 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 805 | 842 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1151 | 1165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1149 | 1175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 294 | - | - |
| Coils | Coil | Coil | 1078 | 1105 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_018488935.1 | PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Raphanus sativus] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VQP3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_018833 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology