Basic Information
Locus ID:
BniB07g026880.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 38855921 | 38858163 | + | BniB07g026880.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 48,248.88 Da | 40.09 | 115.20 | 0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01699 | Sodium/calcium exchanger protein | 292 | 430 | 8.6E-19 | IPR004837 |
| Pfam | PF01699 | Sodium/calcium exchanger protein | 100 | 255 | 2.4E-22 | IPR004837 |
| Gene3D | G3DSA:1.20.1420.30 | - | 129 | 267 | 2.0E-16 | IPR044880 |
| Gene3D | G3DSA:1.20.1420.30 | - | 278 | 434 | 1.6E-19 | IPR044880 |
| TIGRFAM | TIGR00378 | cax: calcium/proton exchanger | 81 | 433 | 6.1E-103 | IPR004798 |
| TIGRFAM | TIGR00846 | caca2: calcium/proton exchanger | 65 | 433 | 1.4E-122 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 283 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13320.1 | cation exchanger 2. low affinity calcium antiporter CAX2 | 0 |
| RefSeq | XP_013628214.1 | PREDICTED: vacuolar cation/proton exchanger 2 [Brassica oleracea var. oleracea] | 0 |
| Q39254 | Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana OX=3702 GN=CAX2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A816IFG8 | Vacuolar cation/proton exchanger OS=Brassica napus OX=3708 GN=DARMORV10_C03P46290.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology