Basic Information
Locus ID:
BniB07g026770.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ATPase activity, coupled to transmembrane movement of substances
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 38808883 | 38814210 | - | BniB07g026770.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 166,218.28 Da | 39.92 | 104.74 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 315 | 602 | 3.07639E-105 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1251 | 1471 | 2.83762E-124 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 628 | 828 | 5.33741E-92 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 934 | 1228 | 9.95204E-94 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 1270 | 1418 | 1.8E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 315 | 581 | 1.4E-23 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 937 | 1178 | 4.0E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 646 | 780 | 6.7E-19 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 934 | 1234 | 8.37E-55 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1245 | 1482 | 2.81E-64 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 626 | 850 | 2.56E-54 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 307 | 613 | 1.44E-33 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 616 | 863 | 2.2E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 897 | 1234 | 3.0E-63 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1236 | 1489 | 3.5E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 287 | 615 | 6.3E-48 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1279 | 1471 | 1.6E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 655 | 828 | 8.8E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 936 | 1216 | 39.079475 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 314 | 594 | 32.801052 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1255 | 1487 | 18.167397 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 628 | 851 | 22.342379 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 753 | 767 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 884 | 908 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_018493081.1 | PREDICTED: ABC transporter C family member 3 [Raphanus sativus] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7TK65 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_095017 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology