Basic Information
Locus ID:
BniB07g026750.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ATPase activity, coupled to transmembrane movement of substances
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 38796906 | 38802276 | + | BniB07g026750.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 145,811.34 Da | 39.53 | 101.40 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 443 | 643 | 2.02026E-92 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 130 | 417 | 1.07112E-104 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 753 | 1047 | 2.04418E-94 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1070 | 1290 | 1.36803E-123 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 755 | 996 | 1.5E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 461 | 595 | 2.6E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 131 | 396 | 5.0E-22 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1089 | 1237 | 1.7E-29 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 441 | 665 | 7.62E-54 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 123 | 428 | 7.72E-32 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 753 | 1053 | 3.01E-54 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1064 | 1297 | 6.49E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 431 | 686 | 3.1E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 102 | 430 | 1.3E-46 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 716 | 1053 | 1.2E-62 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1055 | 1308 | 1.8E-77 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1098 | 1290 | 4.9E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 470 | 643 | 9.5E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1074 | 1306 | 18.147388 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 129 | 409 | 32.508236 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 755 | 1035 | 38.912151 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 443 | 666 | 22.24901 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 568 | 582 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 706 | 727 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_018486333.1 | PREDICTED: ABC transporter C family member 3-like isoform X1 [Raphanus sativus] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7P242 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_095016 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology