Basic Information
Locus ID:
BniB07g026710.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
YT521-B-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 38779350 | 38785707 | + | BniB07g026710.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 122,313.19 Da | 47.05 | 82.03 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17372 | MFS_SVOP_like | 27 | 474 | 6.92057E-164 | - |
| Pfam | PF00083 | Sugar (and other) transporter | 58 | 245 | 1.4E-32 | IPR005828 |
| Pfam | PF04146 | YT521-B-like domain | 883 | 1021 | 5.1E-37 | IPR007275 |
| Pfam | PF07690 | Major Facilitator Superfamily | 344 | 482 | 5.0E-12 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 10 | 484 | 1.7E-66 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 19 | 488 | 1.3E-80 | IPR036259 |
| Gene3D | G3DSA:3.10.590.10 | ph1033 like domains | 858 | 1035 | 1.1E-66 | - |
| ProSiteProfiles | PS50882 | YTH domain profile. | 882 | 1020 | 50.515194 | IPR007275 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 26 | 479 | 36.516384 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 355 | 370 | - | IPR005829 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 826 | 872 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1046 | 1065 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 851 | 871 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1097 | 1111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1088 | 1111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 826 | 850 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13060.2 | evolutionarily conserved C-terminal region 5. | 0 |
| RefSeq | XP_020889344.1 | uncharacterized protein LOC9321006 isoform X1 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A816Y815 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_A01P40470.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology