Basic Information
Locus ID:
BniB07g026090.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Endochitinase
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 38361532 | 38365369 | - | BniB07g026090.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 41,558.29 Da | 38.93 | 57.20 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06921 | ChtBD1_GH19_hevein | 21 | 59 | 7.31257E-16 | - |
| CDD | cd00325 | chitinase_GH19 | 137 | 368 | 6.87231E-103 | - |
| CDD | cd06921 | ChtBD1_GH19_hevein | 70 | 108 | 3.21464E-16 | - |
| Pfam | PF00182 | Chitinase class I | 136 | 368 | 2.6E-109 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 22 | 59 | 1.1E-13 | IPR001002 |
| Pfam | PF00187 | Chitin recognition protein | 71 | 108 | 4.6E-14 | IPR001002 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 71 | 117 | 2.09E-14 | IPR036861 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 22 | 66 | 7.2E-14 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 132 | 375 | 6.19E-96 | IPR023346 |
| Gene3D | G3DSA:1.10.530.10 | - | 140 | 374 | 8.6E-107 | - |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 219 | 277 | 8.6E-107 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 20 | 61 | 2.0E-17 | IPR036861 |
| Gene3D | G3DSA:3.30.60.10 | - | 69 | 110 | 8.5E-18 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 71 | 108 | 1.9E-16 | IPR001002 |
| SMART | SM00270 | ChitinBD_3 | 22 | 59 | 1.6E-16 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 70 | 6.4E-8 | IPR016283 |
| PIRSF | PIRSF001060 | Endochitinase | 62 | 375 | 3.8E-112 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 69 | 110 | 10.920639 | IPR001002 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 20 | 61 | 10.960419 | IPR001002 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 32 | 51 | - | IPR018371 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 281 | 291 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 81 | 100 | - | IPR018371 |
| PRINTS | PR00451 | Chitin-binding domain signature | 38 | 45 | 9.4E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 94 | 101 | 9.4E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 30 | 38 | 9.4E-6 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_013623096.1 | PREDICTED: endochitinase CH25-like [Brassica oleracea var. oleracea] | 0 |
| Q09023 | Endochitinase CH25 OS=Brassica napus OX=3708 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8AYT0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_018669 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology