Basic Information
Locus ID:
BniB07g026080.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 38341810 | 38343064 | - | BniB07g026080.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.51 | 41,840.14 Da | 44.15 | 60.39 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06921 | ChtBD1_GH19_hevein | 21 | 59 | 2.90614E-15 | - |
| CDD | cd06921 | ChtBD1_GH19_hevein | 78 | 116 | 1.61797E-14 | - |
| CDD | cd00325 | chitinase_GH19 | 141 | 367 | 7.18721E-87 | - |
| Pfam | PF00187 | Chitin recognition protein | 79 | 116 | 3.3E-13 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 140 | 367 | 6.9E-95 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 22 | 59 | 1.7E-12 | IPR001002 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 22 | 68 | 2.09E-13 | IPR036861 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 79 | 126 | 1.44E-13 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 136 | 374 | 3.37E-82 | IPR023346 |
| Gene3D | G3DSA:1.10.530.10 | - | 147 | 373 | 5.1E-94 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 20 | 61 | 4.2E-16 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 218 | 276 | 5.1E-94 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 77 | 118 | 1.6E-17 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 79 | 116 | 5.5E-15 | IPR001002 |
| SMART | SM00270 | ChitinBD_3 | 22 | 59 | 5.6E-15 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 73 | 8.0E-8 | IPR016283 |
| PIRSF | PIRSF001060 | Endochitinase | 72 | 374 | 2.5E-97 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 77 | 118 | 10.587488 | IPR001002 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 20 | 61 | 10.672019 | IPR001002 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 89 | 108 | - | IPR018371 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 280 | 290 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 32 | 51 | - | IPR018371 |
| PRINTS | PR00451 | Chitin-binding domain signature | 38 | 45 | 1.0E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 102 | 109 | 1.0E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 30 | 38 | 1.0E-5 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_013623096.1 | PREDICTED: endochitinase CH25-like [Brassica oleracea var. oleracea] | 0 |
| Q09023 | Endochitinase CH25 OS=Brassica napus OX=3708 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D3BAY1 | Chitin-binding type-1 domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 GN=106329066 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology