Basic Information
Locus ID:
BniB07g025960.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 38257276 | 38265791 | - | BniB07g025960.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 36,747.62 Da | 37.25 | 59.38 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06921 | ChtBD1_GH19_hevein | 23 | 59 | 1.6515E-13 | - |
| CDD | cd00325 | chitinase_GH19 | 89 | 321 | 1.01707E-105 | - |
| Pfam | PF00187 | Chitin recognition protein | 24 | 62 | 8.7E-13 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 88 | 321 | 3.3E-111 | IPR000726 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 85 | 328 | 7.31E-98 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 24 | 71 | 3.4E-13 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 93 | 327 | 2.8E-109 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 23 | 63 | 2.9E-15 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 171 | 229 | 2.8E-109 | - |
| SMART | SM00270 | ChitinBD_3 | 24 | 62 | 1.8E-14 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 328 | 1.9E-113 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 22 | 64 | 10.090248 | IPR001002 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 34 | 53 | - | IPR018371 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 233 | 243 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 40 | 47 | 3.7E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 32 | 40 | 3.7E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 47 | 54 | 3.7E-5 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_013625851.1 | PREDICTED: endochitinase CH25-like [Brassica oleracea var. oleracea] | 0 |
| Q09023 | Endochitinase CH25 OS=Brassica napus OX=3708 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VRD8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_018677 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology