Basic Information
Locus ID:
BniB07g025650.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 38106810 | 38115144 | - | BniB07g025650.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 129,634.97 Da | 39.36 | 79.04 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 55 | 179 | 3.88501E-35 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 197 | 524 | 4.01383E-167 | - |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 624 | 875 | 5.0E-74 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 199 | 520 | 1.1E-45 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 885 | 1093 | 5.9E-56 | IPR029346 |
| Pfam | PF00917 | MATH domain | 63 | 181 | 2.7E-15 | IPR002083 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 194 | 551 | 1.53E-96 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 54 | 187 | 4.74E-36 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 54 | 195 | 3.3E-45 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 684 | 800 | 1.4E-41 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 801 | 898 | 1.1E-25 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 196 | 524 | 1.5E-88 | - |
| SMART | SM00061 | math_3 | 59 | 160 | 3.6E-14 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 199 | 523 | 40.460903 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 54 | 179 | 34.351891 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 439 | 456 | - | IPR018200 |
| Coils | Coil | Coil | 532 | 559 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_018489790.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like [Raphanus sativus] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A078IY29 | ubiquitinyl hydrolase 1 OS=Brassica napus OX=3708 GN=BnaC03g73540D PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology