Basic Information
Locus ID:
BniB07g025590.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 38075386 | 38078183 | - | BniB07g025590.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 52,115.01 Da | 42.17 | 110.15 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 10 | 80 | 2.9E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 81 | 5.89E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 184 | 388 | 4.39E-8 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 97 | 461 | 7.4E-10 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 86 | 1.4E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 13 | 76 | 4.2E-34 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 9 | 83 | 38.197498 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_018489934.1 | PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Raphanus sativus] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VQ51 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_018663 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology