Basic Information
Locus ID:
BniB07g025220.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Cysteine Histidine-rich C1 domain family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 37914328 | 37915815 | + | BniB07g025220.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.74 | 49,777.81 Da | 45.29 | 64.79 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 64 | 107 | 2.7E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 202 | 253 | 8.4E-9 | IPR004146 |
| Pfam | PF03107 | C1 domain | 318 | 364 | 6.7E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 146 | 192 | 2.2E-8 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 174 | 263 | 3.24E-16 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 290 | 375 | 6.43E-13 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 39 | 120 | 1.99E-15 | - |
| SMART | SM00249 | PHD_3 | 79 | 139 | 27.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 163 | 228 | 0.014 | IPR001965 |
| SMART | SM00249 | PHD_3 | 24 | 68 | 1.7 | IPR001965 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 9 | 64 | 8.9217 | IPR002219 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 25 | 98 | - | IPR019786 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13590.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_033142269.1 | uncharacterized protein LOC103859383 [Brassica rapa] | 0 |
| TrEMBL | A0A816VP93 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_A03P36980.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G13590.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10018463m.g.v1.0, Thhalv10019835m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g30210.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g017620.2N, BniB07g025220.2N |