Basic Information
Locus ID:
BniB07g025000.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 37822763 | 37823353 | - | BniB07g025000.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.47 | 22,317.29 Da | 59.95 | 67.09 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 119 | 160 | 1.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 98 | 169 | 1.15E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 81 | 166 | 8.4E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 119 | 159 | 4.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 119 | 160 | 12.267982 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10815.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018489024.1 | PREDICTED: probable E3 ubiquitin-protein ligase RHC1A [Raphanus sativus] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0NWG6 | probable E3 ubiquitin-protein ligase RHC1A OS=Raphanus sativus OX=3726 GN=LOC108859610 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology