Basic Information
Locus ID:
BniB07g024780.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 37626807 | 37627949 | + | BniB07g024780.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 43,581.10 Da | 45.06 | 74.29 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 202 | 375 | 6.8E-30 | IPR006527 |
| Pfam | PF12937 | F-box-like | 12 | 56 | 2.0E-6 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 72 | 271 | 5.36E-7 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 125 | 8.24E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 120 | 5.4E-7 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 100 | 323 | 1.0E-38 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 55 | 11.325583 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04690.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_022573347.2 | putative F-box only protein 15 [Brassica napus] | 0 |
| Q9S9V1 | Putative F-box only protein 15 OS=Arabidopsis thaliana OX=3702 GN=FBX15 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X8AWJ3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_018596 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 7 | AT1G77650.1, AT1G77655.1, AT3G08750.1, AT3G10430.1 ... |
| Brassicaceae | Eutrema salsugineum | 9 | Thhalv10000601m.g.v1.0, Thhalv10015788m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g20410.v2.2, Sp6g23470.v2.2 |
| Brassicaceae | Brassica nigra | 17 | BniB01g054610.2N, BniB03g013050.2N, BniB03g013060.2N ... |