Basic Information
Locus ID:
BniB07g024760.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box only protein 15
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 37616803 | 37624897 | - | BniB07g024760.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 135,436.73 Da | 51.03 | 81.21 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 635 | 805 | 6.8E-27 | IPR006527 |
| Pfam | PF07734 | F-box associated | 216 | 390 | 8.7E-24 | IPR006527 |
| Pfam | PF00646 | F-box domain | 430 | 473 | 3.7E-4 | IPR001810 |
| Pfam | PF07734 | F-box associated | 1044 | 1153 | 6.6E-15 | IPR006527 |
| Pfam | PF00646 | F-box domain | 9 | 50 | 0.0069 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 489 | 710 | 6.15E-7 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 430 | 498 | 5.89E-13 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 142 | 1.44E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 419 | 512 | 1.5E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 91 | 2.6E-5 | - |
| SMART | SM00256 | fbox_2 | 13 | 53 | 0.009 | IPR001810 |
| SMART | SM00256 | fbox_2 | 434 | 474 | 3.0E-4 | IPR001810 |
| SMART | SM00256 | fbox_2 | 862 | 904 | 43.0 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 928 | 1150 | 2.9E-27 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 524 | 758 | 2.3E-32 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 103 | 347 | 4.5E-32 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 7 | 57 | 10.318796 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 428 | 478 | 10.822189 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04690.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_013624166.1 | PREDICTED: F-box protein At3g08750-like [Brassica oleracea var. oleracea] | 0 |
| Q9S9V1 | Putative F-box only protein 15 OS=Arabidopsis thaliana OX=3702 GN=FBX15 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X7VQV5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_018600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 7 | AT1G77650.1, AT1G77655.1, AT3G08750.1, AT3G10430.1 ... |
| Brassicaceae | Eutrema salsugineum | 9 | Thhalv10000601m.g.v1.0, Thhalv10015788m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g20410.v2.2, Sp6g23470.v2.2 |
| Brassicaceae | Brassica nigra | 17 | BniB01g054610.2N, BniB03g013050.2N, BniB03g013060.2N ... |