Basic Information
Locus ID:
BniB07g024250.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
serine threonine-protein kinase At5g41260
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 37312556 | 37320386 | + | BniB07g024250.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 108,142.99 Da | 43.28 | 80.86 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 79 | 305 | 1.1E-21 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 511 | 749 | 1.0E-20 | IPR001245 |
| SUPERFAMILY | SSF48452 | TPR-like | 376 | 458 | 1.77E-8 | IPR011990 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 36 | 310 | 1.39E-38 | IPR011009 |
| SUPERFAMILY | SSF48452 | TPR-like | 835 | 934 | 1.88E-13 | IPR011990 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 473 | 753 | 1.04E-38 | IPR011009 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 827 | 941 | 2.7E-14 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 578 | 769 | 1.5E-38 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 368 | 463 | 1.4E-9 | IPR011990 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 472 | 576 | 6.2E-25 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 29 | 132 | 9.4E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 134 | 319 | 1.2E-37 | - |
| SMART | SM00028 | tpr_5 | 409 | 442 | 48.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 902 | 935 | 12.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 868 | 901 | 200.0 | IPR019734 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 488 | 755 | 18.294355 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 57 | 311 | 17.955139 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09240.3 | - | 0 |
| RefSeq | XP_018489484.1 | PREDICTED: probable serine/threonine-protein kinase At5g41260 isoform X3 [Raphanus sativus] | 0 |
| Q9M324 | Serine/threonine-protein kinase BSK6 OS=Arabidopsis thaliana OX=3702 GN=BSK6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VPX8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_018543 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G09240.1, AT5G01060.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013351m.g.v1.0, Thhalv10020637m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g07620.v2.2, Sp6g40450.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g055450.2N, BniB02g058000.2N, BniB05g031390.2N ... |