Basic Information
Locus ID:
BniB07g022580.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 35993977 | 36016545 | - | BniB07g022580.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 470,638.50 Da | 46.76 | 87.86 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 803 | 903 | 9.79496E-5 | - |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3172 | 3337 | 3.4E-9 | IPR009543 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 562 | 781 | 2.0E-35 | IPR031642 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 134 | 375 | 4.3E-63 | IPR031646 |
| Pfam | PF00169 | PH domain | 802 | 907 | 4.7E-9 | IPR001849 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1965 | 2118 | 1.2E-9 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2190 | 2338 | 2.2E-10 | IPR009291 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 108 | 1.9E-31 | IPR026854 |
| SUPERFAMILY | SSF50729 | PH domain-like | 796 | 910 | 3.39E-10 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 796 | 911 | 1.9E-6 | IPR011993 |
| SMART | SM00233 | PH_update | 800 | 910 | 7.4E-9 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 799 | 908 | 10.0554 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1811 | 1832 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_048594639.1 | uncharacterized protein LOC106360702 isoform X1 [Brassica napus] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A397YJL7 | PH domain-containing protein OS=Brassica campestris OX=3711 GN=BRARA_H00891 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology