Basic Information
Locus ID:
BniB07g021610.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 35084012 | 35084881 | + | BniB07g021610.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 31,243.58 Da | 73.43 | 68.23 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 119 | 162 | 7.64672E-19 | - |
| Pfam | PF13639 | Ring finger domain | 119 | 162 | 2.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 99 | 168 | 2.78E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 95 | 167 | 1.9E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 120 | 161 | 1.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 120 | 162 | 12.84335 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 270 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16720.1 | TOXICOS EN LEVADURA 2. RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. | 0 |
| RefSeq | XP_013721108.2 | RING-H2 finger protein ATL17-like [Brassica napus] | 0 |
| Q8L9T5 | RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7VPK9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_018348 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology